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    •   Who's Online
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      Ephemerids
    One Day like Today...


     Three Dimensional Structural Analysis Introduction a
    PDB Posted by jkhwang on Wednesday, August 22 @ 21:43:12 CST (2337 reads)

     Text...



     Application of FEP to biological problems
    Assignments Posted by jkhwang on Thursday, May 24 @ 10:07:06 CST (12035 reads)

     Find an experimental work, besides ones mentioned during the class, that can be studied using FEP. Give details of your calculation procedures
    Deadline: 5-31



     Quantum particle in Feynman formulation
    Molecular Dynamics Posted by jkhwang on Thursday, May 24 @ 08:54:09 CST (4089 reads)

     Quantum pseudoparticles used in molecular dynamics simulation



     Simulation of quantum effects in Feyman path integral formulation
    Molecular Dynamics Posted by jkhwang on Thursday, May 24 @ 08:47:20 CST (8148 reads)

     Simulation of quantum effecs using Feyman path integral.

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     Simplified Protein Model
    Molecular Dynamics Posted by jkhwang on Thursday, May 24 @ 08:40:22 CST (5833 reads)

     Application of free energy perturbation method in the Simplified Protein Model (SPM).

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     Free energy perturbation method
    Molecular Dynamics Posted by jkhwang on Thursday, May 24 @ 08:10:33 CST (10724 reads)

     Free energy perturbation method is frequently used in calculating free energy change in biomolecular simulation of enzymatic reactions, ligand-protein binding, protein folding ...

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     THE REQUIREMENTS OF BIOCOMPUTING LAB in NCTU
    Posts Posted by jkhwang on Tuesday, May 15 @ 17:03:44 CST (4991 reads)

     Computer skills:
    1. Languages: Perl, C/C++, PHP, Java, MySQL/PostgreSQL
    2. Operating systems: Linux/FreeBSD
    Personal habits:
    1. Non-smoking
    2. Good personal hygiene habits
    3. Good habit to keep one¡¦s desk neat and tidy.
    4. No reading newspapers in the lab
    5. No eating in the lab




     Install VMD in your system
    Assignments Posted by jkhwang on Wednesday, May 02 @ 18:20:02 CST (8767 reads)

     First the good news - no live class on 5/3/2001!

    1. Brief introduction to VMD.
    2. Download VMD
    3. Check the screen shot of VMD.
    Deadline: 5/10



     Assignment 4-26
    Assignments Posted by jkhwang on Thursday, April 26 @ 17:04:05 CST (5472 reads)
    1. Study the InsightII tutorials:
      1. Biopolymer
      2. Homologous building
      3. Discovery_3
      4. Profile-3D
    2. Find your own partners and form 4 groups. Each group designs its own project that should make use of all the modules that you learn from the tutorials. Your report should include
      1. Objects
      2. Methods (deadline: 5-10-2001)
      3. Results
      4. Discussions (deadline: 5-17-2001)




     Linux tutorial (optinal)
    Assignments Posted by jkhwang on Thursday, April 12 @ 14:25:55 CST (6760 reads)

     This is for people who like to learn more about Linux/UNIX.

    A reference for Linux tutorial can be found here.



      Survey
    What is free energy?

    Energy that is free.
    No such thing, since no energy is free.
    The energy that conforms to GPL
    The mother of all thermodynamics functions
    Another term for probability

    Past Surveys

    Votes: 774


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      Past Articles
    Wednesday, April 11

  • Assignment 4-11 (81)

    Wednesday, March 21

  • Assignment 3-21-2001 (27)
  • Molecular simulation material (95)

    Friday, March 09

  • Assignment 3-9-2001 (94)

    Wednesday, March 07

  • Swiss PDBviewer for dummies (86)

    Thursday, March 01

  • Assignment 3-1-2001 (88)
  • Molecular graphics software available on the net (96)

    Thursday, February 22

  • Rasmol for dummies (0)


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